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Isolate typing, strain identification and antimicrobial resistance analyses using QIAGEN CLC Genomics Workbench
QIAGEN CLC Genomics Workbench provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization through SNP and K-mer trees using NGS data, and antimicrobial resistance characterization. CLC Genomics Workbench is widely used for analyses of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.

In this webinar we’ll discuss:

I. Overview of different tools within QIAGEN CLC Microbial Genomics Module and research
II. Focused review of isolate typing and characterization
a. How to import data
b. Utilization of metadata
c. Downloading and managing references
i. Database of Isolates/ Resistances/ MLST
d. The ‘Type a Known Species’ workflow
i. Review details for each Isolate
e. Creating SNP profiles to specific reference
f. Generating a SNP tree for isolate comparison
g. Exporting tabular and high-quality graphical outputs in wide range of file formats


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